NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10023010

Scaffold Ga0222719_10023010


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10023010 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4959
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029369Metagenome / Metatranscriptome188Y
F031061Metagenome / Metatranscriptome183N
F101061Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0222719_100230101F031061N/ANKNLMIQTLHLRTKMKQQQFKKLIETLGKELNVLPDVLPVRDVSNIEEQIKNKKMFLQYDPATHGGSYKLYEHYLQNKDLKWIWCHSGDRYGADPIKLYETAPDRCPVYGTLLDYGLGNNASTNHPLFRPSIDHIEQQSRGGVKRKDNSNFQIMSLQANTHRNNQTLMHMMYLLKYELTNNS
Ga0222719_1002301012F029369GGAGMSIEVSQKRAVFSQLKPYSFHSGDDDYMEVTEWSNGEGYDIVIDRKNNTERFSLTHGEWELLQVLMNWKGE
Ga0222719_100230104F101061GAGMESKVVNFEDALEKDDWGIIIGKDGTLKGMFIPDGSDEEQVPEVIVKLCIDYFGIDPTKEETLH
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