| Basic Information | |
|---|---|
| Taxon OID | 3300021964 Open in IMG/M |
| Scaffold ID | Ga0222719_10000481 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 39844 |
| Total Scaffold Genes | 90 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (31.11%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 37.495 | Long. (o) | -122.0933 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005287 | Metagenome / Metatranscriptome | 406 | Y |
| F007770 | Metagenome | 345 | Y |
| F029710 | Metagenome / Metatranscriptome | 187 | Y |
| F034890 | Metagenome / Metatranscriptome | 173 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222719_1000048129 | F034890 | N/A | MIQIEDANNEKYHINPKQVVYVKERMHMGKMMYKIMLTNGEALMTENEHGAKCIIASIKSKK |
| Ga0222719_1000048132 | F029710 | N/A | MSIKNRNAKLGEDGWYSWLTIRQDLVGDDLSAPIMWLDDKSEDDLFPSDDLNIDWVEEMDKEGAPIIDGDHFGRDICIEVTCPSKNIDKRRAIGYNIDFDWN |
| Ga0222719_1000048134 | F007770 | N/A | MSGEGLSVSFRRTQATTKSNQELLEKFQKIIYASPVTNHMKWYGRDHSVEIEEHGDDTLQKWQQEGVAIKDTFRFCISVYESWHQDADLYESHERKDSFVSLARKFANDNALMYFPDGFPAEWIEEEVIDGEKNWNHYNVKPDDKNIDKICDVWYRYGIMKLQAFDEKVESQIWAEARDNIKELMEVK |
| Ga0222719_1000048159 | F005287 | N/A | MQISSLQIIYSEHGYDECFEYKNGKGRVPDGLAVGYEIEDHDLAGSYSRIVLFNDIKYSKYDHEYWDNYELEMDSDRLVLP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |