NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10000269

Scaffold Ga0222719_10000269


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10000269 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52548
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (16.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003058Metagenome / Metatranscriptome510Y
F003647Metagenome / Metatranscriptome475Y
F004192Metagenome / Metatranscriptome449Y

Sequences

Protein IDFamilyRBSSequence
Ga0222719_1000026914F003058GAGMTDEEMSKLADIIVDKIIQRQKAYDEEFKADIQAMVGENTDLEFGVITQDELIIQEIDSLQERLAQLEEKEDYESARIVANKIKHLKNKYNL
Ga0222719_1000026920F004192N/AMKKDFNEWMASIGNIYYADNRLMSQAFEKIEEYEEI
Ga0222719_100002699F003647N/AMVMCEWTLADIKNRASNKAFAKVTTLTLDVETYKEDLRTGNIGGVTYEEFEQVVKGYEKELQVWNYITELIEKQ
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