NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10294708

Scaffold Ga0222712_10294708


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10294708 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1019
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003291Metagenome / Metatranscriptome495Y
F010916Metagenome / Metatranscriptome297Y
F024306Metagenome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_102947082F010916N/AMSTVETIQDELLSLVMGHDWSYMMSDSHSVWEIGMRVESTIKAKIHALCAIHREDAEALKGIVKGIAGQDYTDYDVYGYGLKYRTINGWFRPYLGLAEF
Ga0222712_102947083F003291N/AMNMNQTTEKLVSVFNQDELAALMTAMGGYINTKSKQKRSTGVEVVLFNKIVDALLVSNYLNAEEVEVKPNANAPMGSAAYKAWEAMYDSDVAAHR
Ga0222712_102947084F024306N/ALAEYPVVKGKFPKKYHSEIKSELAVAGFGSVSNFLIK
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