NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10056146

Scaffold Ga0222712_10056146


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10056146 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2910
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000980Metagenome / Metatranscriptome814Y
F002207Metagenome / Metatranscriptome583Y
F002935Metagenome519Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100561461F002207AGGAMPNWCYNTLTIQGPRSEVDMIKDRLNAPFTLAQETYGMGDISSSGFPTKIQQVKYSNPVFAFFNIHSYKDDGITDEEYACQPSRGGIDTNDPDWFRKSVEFAKTQKDWYSWNNSNWGTKWDVAVRDGEEYSNTELLEHNISDGD
Ga0222712_100561466F000980N/AMTKYQKYTWVCTSDCDALIEYTFKDGYGWPNGVMDLTCRCGNDCTLLSVEDATIPYTDSPLPTEEEKMEETTTPTVTVPDTYNANLLVTYKVIKGYSDPEYATDKVASIEWDLHNARQAQKHNAVLQDKIDAVKEIICEAYADSSDQDTLREIAEALSIELIKEVEFTASIEVSGTYSYNILESEWDNDFESEVTDALFADSNHGNIEIVDQEVCNVREA
Ga0222712_100561467F002935AGGMAERSKGYIGTIVDGEKLAVIANGIYNLQYSSDFSECKVDDLLFIELEEKNVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVDTVKSCLTDRTEDISDYIRVFGSRLDNNCSLWQSKMSVASDILPV
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