NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10051657

Scaffold Ga0222712_10051657


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10051657 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3065
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002162Metagenome / Metatranscriptome588Y
F002357Metagenome / Metatranscriptome567Y
F007469Metagenome / Metatranscriptome350Y
F028151Metagenome192Y
F037698Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100516571F028151GGAMNAWLEARDLGFVIMWAIVGLTIMAWVIHEIKETAFQNGYWKGRADGWNSHRRLMNTKAKSDEVFDYDKN
Ga0222712_100516573F002357GGAGGMAFNLEDYEDVATLNKWFIANYPMGRSDISVISADPEKGYILIQATLWRDSKDAAPAVSNVAFGSRETYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMKKVDSNPTFKEKLESRQNMYGKPGSKSAQIETILRDSFEADKPKEPVAWSVGDVVAEIGASIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKECAPKWAKLTANGKWYFEGGE
Ga0222712_100516574F007469AGGAGGMGYVEIIDGSGFTGRIENDQVLIEPSLMRCDCCNDDRLLREGDLFKCYNCHTINRIPYHA
Ga0222712_100516575F002162N/AMPNYDYECAGEGVVIVMDLPMDHKTPKCQVCGAEMRRIYTAVPFILRGTGWAGKDG
Ga0222712_100516577F037698AGGAGMCADHDEMTHQINWAYQNKLREQWLLDNPDSQYIGWMSI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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