| Basic Information | |
|---|---|
| Taxon OID | 3300021963 Open in IMG/M |
| Scaffold ID | Ga0222712_10031474 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4194 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.1516 | Long. (o) | -121.6883 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003964 | Metagenome | 459 | Y |
| F007749 | Metagenome / Metatranscriptome | 345 | Y |
| F009743 | Metagenome / Metatranscriptome | 313 | N |
| F061662 | Metagenome / Metatranscriptome | 131 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222712_100314741 | F007749 | N/A | RALPQYLFVGIDTQGDLLYDYQIPIADQVLYAKTADDVSRVAASGTVANDPVCTWVTAAQLMTYIGITITNPSDDYTLLTQSVSAGNQFCYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIEATYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA |
| Ga0222712_100314744 | F009743 | AGGAG | MKIKLKLTRTPNGEPEYYYTNLFVVTEWERLERRNIQQLSANPLYSDYACWMHTILKIKGEQVGDSWREWLSKNPDIDIMPVLDETDTNPTDAAPTVAN |
| Ga0222712_100314745 | F003964 | GGAG | VDSVSTKVEVVGLKDALKTLNKIDKSLRREITKDYKKIVQPVIDDANNLVPSNAPLSGMARNWSTKSGFKMLPWVPGFKQKIAAKINTRNIKEYAGNKSNVGTFVIQWQGATGTMFDTSMDGRLGRALTARYGRSSRVMWKAYEQREGDVMSEMEKLVKRVMDEANRETA |
| Ga0222712_100314747 | F061662 | N/A | MPGVAVVESGNYDLQIETGFIVNTFTLDNVTSGVLDNTFFVLDGNTEYADVLADCTNVMVRRGRRDVGDQFSAGTMTFTIRDVDGIFNPFDDNSPFYDTPQSKPGLAPMRKVQLIRYDLAGDPEYLFSGYVVNYDYNFALGGLDTVTVYCADQFYLLSQTYMNELNVSAELSGARITTVL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |