| Basic Information | |
|---|---|
| Taxon OID | 3300021963 Open in IMG/M |
| Scaffold ID | Ga0222712_10011124 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8119 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (90.48%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.1516 | Long. (o) | -121.6883 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000311 | Metagenome / Metatranscriptome | 1326 | Y |
| F001043 | Metagenome / Metatranscriptome | 794 | Y |
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F002387 | Metagenome / Metatranscriptome | 565 | Y |
| F005741 | Metagenome / Metatranscriptome | 391 | Y |
| F007644 | Metagenome / Metatranscriptome | 347 | Y |
| F038241 | Metagenome / Metatranscriptome | 166 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222712_1001112413 | F000311 | GGAGG | MYFELTAPSQVAFARAIWDAELIGLDPEQCGPLTFNIGTGSIEKVSRIRDKYSLTETYWSDKEATGY |
| Ga0222712_1001112414 | F001043 | AGGAG | MSDYKDGFEDGYKFAREELMEKLAEIDIADIDSWILDRLSEMIEGNQI |
| Ga0222712_1001112416 | F001125 | GGCGG | MGDRANFGFKDSKGDTLFLYGHWAGAEMLHHLATAVAHAEPRWNDEGYATRICISQLIGQEWESQTGWGLYVNHIADNEHKVPVIDWSNQTFTLYEEDLQTVVFSLPLEKFAEKYSRLVM |
| Ga0222712_1001112418 | F002387 | GAGG | MSDPHGIIGIYRKGGGIMASFLEDVNQMVIDAVYQDIAEQLLEDWINNNLDESQYYADKQFAEMSGDKFIYDEFNKFYNIKEGDEDYLC |
| Ga0222712_1001112419 | F038241 | GAGG | MLGYSKEDLDQMSNAVHDAKLFYIMKSDVEQVDKDPLVEGLLKANDFLQGLWAEGYFD |
| Ga0222712_1001112420 | F007644 | GGAGG | LTKSSHFLEYMKIHLISLIQDLDKLYSNEDSFKYVEGQIEATRHLLSVATDIMNSSNERY |
| Ga0222712_100111249 | F005741 | AGG | MKNRFRVEIYDANKLNDLTIYSDSGVDKDYLTELVISNIKQFSGRVNAYAYDNQKKKKVSAMFFDENMVANLKSKIQSATKINFQLE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |