NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10009623

Scaffold Ga0222712_10009623


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10009623 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8932
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001531Metagenome / Metatranscriptome676Y
F008808Metagenome327Y
F041080Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100096231F041080GAGGMSTTQTILGLAEELRIIADEISYNAFDSSSDFPKRGTIVKALPSQTRFKPKSMWVSLGNGTYKHLTGSKGLTTTHERLDGYTEVIFEA
Ga0222712_1000962311F001531AGGAMVELEDIKQSLYEWFIEHPNKLDEWEAIGKRDAKNLIYRSLRNQALDYCQKWKAKSVGYEVSDLFYYAPEVVEAMLPAVLRHDLTITPQLNLGGSSTPTAPSEGGNLMAMMIEIDWGYWKLSKDDRRIIFLRHAESMDYKEISNVLSLGSEDAARMRTKRALNRLINKIGGHKPYRDEDSTPTGEEVAPVEAESLEEGDEHNNTDE
Ga0222712_1000962314F008808N/AMKNDIKKCPQCGELFENVFEAIDHLLEEDEEFDPALILPNGYRLMIGSLLKCLYKYSNEPEKIKEITESTYLTLYTAETSPLEVMHVIEDMIVGSSMIGIDDELKRLLEDGE
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