NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10009024

Scaffold Ga0222712_10009024


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10009024 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9332
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (9.09%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F002287Metagenome / Metatranscriptome574Y
F003659Metagenome / Metatranscriptome474Y
F004838Metagenome / Metatranscriptome421Y
F011474Metagenome / Metatranscriptome290N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000902411F003659N/AMPQTLTAADVIGRYLIAKKDVPVYDGPFGTRIGTIKKGNSTPEVYSYLVRQGQVFWVFDYTIPGQTPGAYYALQSPDAFSLSNVPGNVVIAPNVLPSVDVFPQGSQIKTFALYGIIGVLALLLLKK
Ga0222712_100090242F004838N/AMITAQDKILHVASKLGLTSLKDMQASTGAVYDVDTDLSGQIFSNASRHVNPSVTNLTENQFEVNEALLVETVAFYVNDFNRNILNFQSVYGSNVVIVFDLIIGNKRVLKDTPVFAAGSPYCFANNANTTVSVNEQFVQGYAPRHQVYMEGTGILIPPQVQWSVQYNLFNVVTGAIVAPIGDTPIGCYLFGTKVLLNFNTSI
Ga0222712_100090243F002287N/AMSQINKLSFVDGKLGAPTSGQQTTRVLFNTIENPGTTSGLIFFKSFQGLTPGQTNLTMNKLDSMESMVIKTIYLAQFSSAGVLSSVGGNVSQTLSIIVGNQTVVKNLPIQFNQGVAGQAFDRLHENAGANVNPLSPATTTYQTAQPCEIRLLTDIVIPPQVAFEVRLDSTNAVYGTGAVVCALGGYGKIFSAGNSF
Ga0222712_100090244F000710N/AMISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGLIFSSTTSAAPATLVNALQLRVSLTINNDVVIDDVVAHELGASVASGITTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNVTVYYKNEI
Ga0222712_100090247F011474GGAMKEKIDHLTHFDIVVKEELNSCTSAEDMLMVLARNYDLRKPLGGITKAAFTIGLRTAVGMLRPEVSANFNYKAKELKDTRFPHLKIFK

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