NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10007181

Scaffold Ga0222712_10007181


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10007181 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10843
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (87.88%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F002071Metagenome / Metatranscriptome596Y
F020171Metagenome / Metatranscriptome225Y
F071228Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000718112F002071AGGAMTNSTLEVGQTYTTTTNNVVGIIKAIDNHPSGVSRILLDVNGKERWTSLTN
Ga0222712_1000718118F071228AGGAMETPYGATVTPAVPATYNPSALVQYKVIKGEDVTYPISKVTDLEWDLQQGRTNRESLDNLKSTVRELEELLIELYNPNYTKEEALKQIAELFGFELTKTVTVTGTIAFEVTVEVPLDEMDDFDAHYKLGDELSLTSYGSDVEVGDWTIESTDVDWN
Ga0222712_1000718119F000311GGAMYFELTAPDRLSMEMAYWDAQIIGLDPTAMSPLTFNVGTGSIEKVSRIRDKHNLIESYTSEYEPTGYMRR
Ga0222712_1000718123F020171AGGAMPELFIDTVAEHITGAMQQEIAEQLFEDWSNKNLDEGAEYAEYEFMQYASPELKQEYNNFYSYIEGNEYYLC
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