NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10003957

Scaffold Ga0222712_10003957


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10003957 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15811
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (71.88%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001848Metagenome / Metatranscriptome626Y
F003066Metagenome / Metatranscriptome509Y
F009394Metagenome / Metatranscriptome318Y
F024784Metagenome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000395713F024784AGGAMEILEKVIDWIVWILIVGGMGWFAYGCYELIDLFFMRR
Ga0222712_1000395722F009394AGGAMVKTDTDSRLSTHEEVCALRYEQINARLKRLEQILLGTAGFVIVFLLTHFTK
Ga0222712_1000395727F001848N/AMILHYIPKDKLREHWDYVKHGLELVRAKGHTSWIVEDVYCDCYENRSMLFLGIIDNKAVGFVVLQPLGDTLHVWASWSTINDNTLFQQAWQEIQTIAKQGGKSKVTFNSQRKGWERRARLMGFKPQTWEYTL
Ga0222712_100039579F003066AGGAMAKKEPVAWLYEEFDVKSGDLKKSYLWSFHPNQLSYLNDLKNTTHHIKITPLIPGEPVEEYKGLSKYDSKRLVEANNGL
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