NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10003923

Scaffold Ga0222712_10003923


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10003923 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15885
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (81.40%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000868Metagenome / Metatranscriptome853Y
F003422Metagenome / Metatranscriptome487Y
F009530Metagenome / Metatranscriptome316Y
F009685Metagenome / Metatranscriptome314Y
F021288Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000392313F009530AGGMTITYSIWQGSRLLSIDNVAHEMKAIDHLIDSLNDSNLGKKVKFSANVQSIKTGDNK
Ga0222712_1000392330F003422N/AMTTYEKYTWVCTGDCDALIEYTIKDGYGWPAGVMDLTCRCGSNCTLLSVEDATIPPITTTKEEQMETETIGSDALHSPAVAYNPDLLVTYKVLHGYSNPEYTTSKVTSLEWDLHNGRQSQKQANLYSSQISTVKDIITEAYADSDDQDTLRAIAEALNIELTRTVEFTATIEVSGTIDLNLLEDYDFETEITDNLYVDSQSGNIEIGDTEICYVREA
Ga0222712_1000392336F000868AGGCGGMSDTSFLENENQMVIDAEMETIAAQLLEDWIYENLNEGQFYADWRIADMSDSNYLKGRFNQFYDLKPEDQYYIEWDEEK
Ga0222712_1000392337F021288AGGAGMLGYTSRDLADMSYGINSADLLINADEHPAIHNYLVKAGEFLDGLWAEGYFDHV
Ga0222712_1000392341F009685AGGAGGMKMSDQYVDSVLAEAQRLLWGGSETENIQAHNLISNLIRERMGTEQNS
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