NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10001404

Scaffold Ga0222712_10001404


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10001404 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29741
Total Scaffold Genes87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (19.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007751Metagenome / Metatranscriptome345Y
F024788Metagenome / Metatranscriptome204Y
F058148Metagenome / Metatranscriptome135Y
F088906Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000140417F058148N/AMELLDVRGMSVNEYCNFVESTSLYTGISAFELNMEYCFEIGLISNEMYERAKAELLDRRRYS
Ga0222712_1000140448F007751N/AMEKQFITNFKIKNMNQIEELKSVIGKDVSQNQSPTCRARLVSVGKANCIFESVPSPYDKFPKPEFVGVKYKVPNWIAWNSFFF
Ga0222712_1000140476F024788N/AMSLDERTMKLNEQRFATIVILCNVLDTEEGVTDHIKSAICASLINMLERSMNDDDTGLVNLINNSIDNFCAKVENQRGIENYRDTLSETVHLAKKLVDELNTKAKRIKEGEDILKGICLN
Ga0222712_1000140477F088906N/AMEKQLAKIVNKGLAGEPQNVVLQVIDTLKIFEFSQIKHVDEAGLIRDVTLIDDTLDQTEIKHILNNMGHDVEITFDENDNVTLYF
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