NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10001236

Scaffold Ga0222712_10001236


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10001236 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32447
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (82.98%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F002501Metagenome / Metatranscriptome553Y
F008245Metagenome / Metatranscriptome336N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000123610F000376AGGAMSEYQERAKLCTCCTKHVPLPTVLREYNGIMVCPTTFTNIMEYRRIWESYGRRPMGSIRKHFSEYVQQIVESTIDKNDDGSIQ
Ga0222712_1000123612F000369AGAAGMTNEIEPAVHFDRMNKVVEELLKGNSASQIATLTGFSRKEVLEYVDEWKSVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADTQGQLNVKSGALKLIADIETKRIAMLQSVGVLENTQIASQIAETERKQEVLVGILKEVTASCPKCKMDVAKRLSQITGIVESVVIEDADVV
Ga0222712_1000123618F008245GGAMTEDKNTLELISNITEFNDLHDFMQDEHLDKALSIVVKLLMNPDVPSAKAPMLIMELQAMSTKFAVMSSVYSTIAKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYNS
Ga0222712_1000123635F002501AGGMWCGKCNGRVFVDRVFSQKLHMELFCIMCGKRWMINKETSSFGKWLDQKESANQKFYGIS
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