NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10159679

Scaffold Ga0222713_10159679


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10159679 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1546
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002826Metagenome / Metatranscriptome527Y
F004010Metagenome / Metatranscriptome457Y
F025457Metagenome201N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_101596792F004010AGGAGMLGKDVSKNMHELAMDNKKKGKERGAGGTPRSRKQMIAIALSAAGKSNKSPRKFRMRSGM
Ga0222713_101596793F002826GGAMEVEAKDRLKWACDILLSARVKLAVERDRANHGHAIDIIQIIALVDAAALVCKEMAEDK
Ga0222713_101596795F025457GGAMKLWTNQTNSIHKVDDNLLHVRNTYVIPDELTGGIWADSIPCPHKIKPYYKGRSTGGATAVYRAGAIGDAVIATAFVNYLVQESGGIVDVYAPARNLPLYAGLGAKLYPLPCTLEAWDSYDSHLPTDDLFSGQVGETKLGTGPGNCYKRIYEWMGVWDEKTMAKYCKPMLHLIEPDHEEIKALGKWPLPDKYFAYHVSSSGPTRTYPPKMGQDAVLALLEAFPEHHAVIIGLDNSNNFHVDHPRVID
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