NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10111305

Scaffold Ga0222713_10111305


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10111305 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1945
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016662Metagenome / Metatranscriptome245Y
F030094Metagenome / Metatranscriptome186Y
F070119Metagenome123N
F081267Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_101113051F070119GGAGGMNLNSYSVSDFVLPNFLEPGDIIQWEEEIYTVKKFDLLSDGFIIYATDEMEDDVELLIPDNVIISLMEEQ
Ga0222713_101113054F081267AGGAGMSYEYHWVVVYDEDWGAFMVDAETTDLNFGEVHGAAYNKTTGHWEDVKDDLGVETEYLRLEELLAYNLTRLDLTKKV
Ga0222713_101113057F030094GGAGMKLRGIFEGTFESVWSMEVPQAEWDKYLEEHPGIDETDSDDIQQMWDYFKSIGCYDEIDDTVDTDVVMTGIETYGVEVEIN
Ga0222713_101113058F016662N/ALVATTEVIYQEADLIKMMLDTGEYGIHGHPISHEAMVEFVKDQEWQIEHNLFLDKFDVPCQISIKDEDGTDLFFAKNKLEIV
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