NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10105534

Scaffold Ga0222713_10105534


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10105534 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2011
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003066Metagenome / Metatranscriptome509Y
F019123Metagenome / Metatranscriptome231Y
F030690Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_101055342F030690N/AMGVGMVMFVRTIMQRSEVEVICNHMLGRVIVSCEALHGDSTIVITLDDDSLIEISGEELSIYGELTPRDD
Ga0222713_101055347F019123GGAGGMVDSKPLTQEEIIKIYKEAFGKGDQLVTIDRIFRFARLVEQAHGIKNASN
Ga0222713_101055348F003066N/ATFVVWSSKDYSYRKDGVLLMAKKEPVAWLYEEFDVKSGDLKKSYLWSFHPNQLSYLNDLKNTTHHIKITPLYPGEPVEEYKGLSRYDSKRLTEAYGGL
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