NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10064108

Scaffold Ga0222713_10064108


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10064108 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2746
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001182Metagenome755Y
F003407Metagenome / Metatranscriptome488Y
F015839Metagenome / Metatranscriptome251Y
F064494Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100641083F015839N/AMKTTTFIASVASDLYNAGFACDGHPFIAEQFYVVIENAAGKRFRHQATFNGTQQVICEETGDACFPDLRAEASAKADRLAARVNAALEAGKFISPTFWDEVDPAYGSDEYFDQGTEAKRLFAEKAAA
Ga0222713_100641084F064494N/AMVVSMNRDEIIELIEANGLTLHGDIEHFAALVADLVYAKYLEQPTPNQTGVISITISEPVAYLCENAVGHKYFRWKKPSSVYKPIALYTKDQA
Ga0222713_100641085F001182AGGAMNYGPTPPCPKDLFQFECAVEDVDLVCFLEYIPEEKGSTDSLGSPYEPDFEECMALNNAYIAGSNVDIAHLLLQEFVDHIEVSALKKYYDR
Ga0222713_100641086F003407N/AMTDKELPLALDACLDLVKDLLHPEVFGHAIPNEVKSRAYVVRTMLERLKARMETSTWPEA
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Institute for Fundamental Biomedical Research
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