NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10025916

Scaffold Ga0222713_10025916


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10025916 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4822
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001106Metagenome / Metatranscriptome776Y
F003408Metagenome / Metatranscriptome488Y
F006841Metagenome / Metatranscriptome363Y
F009961Metagenome / Metatranscriptome310Y
F070122Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100259161F001106N/ADLKVIATDFAVDTEGLKNKKDIIAALAEEGVTWSVYQSTVEAVEKDTEEIEILPKFDPKSQPENTILVRMTRDNMRYDIHGKTFTKNHPFVAMSEEDAQKIFDKEEGFRLATPKEVQDFY
Ga0222713_100259163F070122N/AMSELIGSLMPMQADIYAQSSKQDSNTGSIKKMWSYVRTIDCSAKGNITSSGTSRSSDKQLFSNKYENQQIVEIRSISQINYREKINNIRDSAGNVIWKELNYPTETPTVFEVISSTPVTDPFGNVIAYNSIAKRSENQEIGL
Ga0222713_100259165F009961GGAGGMTVDYKIDAMFELRKFLWQELKNSKIFKASDYYSEGSDSEIIPIIPVQQSPEMDQFLNGKKHIVYDKIGISYEDIWLICCEKILFTIYSSDVTDIYEIRNLIIDLFRRMDDSAKDANLAKTTSKLIFHSINVVETSPIDPSMELQGYMSSDVILEVKYSRTTGPNGRFD
Ga0222713_100259167F006841AGGAGGLATTVYDVEEIQLQNGATVKLKPLTIKELREFMKVINRTQEVTSEDETLTILIEACGVALKKQLPELVADKDAFEDTLDVPTINRILEVCGGIKMDDPNYLAAAVLAGQN
Ga0222713_100259168F003408AGAAGMPELIQTFKSMQKTESEKRKFLASIQGVDLNENSNESQEGSTFEDVRRRALGINASADDVVALQGSFASEAGFGIGAGLGYRIE
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