NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10015487

Scaffold Ga0222713_10015487


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10015487 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6603
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Chitinophaga → Chitinophaga eiseniae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004112Metagenome / Metatranscriptome452Y
F011844Metagenome / Metatranscriptome286Y
F079966Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100154873F079966N/AMADVVKSEGLVIAVTDASGNVYPFACAKDATISITRDFLELAPRTNGVFREYLPNRSSFTVSGSGLVKMSQSYMQPITFFDTFIEGSDSEFIGYLDMIDPQGNYKVYQFSCIIQDLSLNSTVGQTGNYSYSLQGTGPLTEISSVDSYTVGLGKIFGRNPATYKLVAVGIAGTWYYNYSVVNEGAFFSITVGTQFNGLSAKAVYITL
Ga0222713_100154876F004112N/AMIDGHEAKRVDEYKQTRMLMFTMVRLMGDPKTAPKTPEALWQLPGDEEIGKIDEEEYRQIFKRLSNG
Ga0222713_100154878F011844N/AGSLQNIEIDVTGGSSYKNLVCLRTSSVNSTVDSTTDQTNCGVLTAVGEPQMSLDFDAICETAPSVAQVSYNSLLSAFANKTLVTVRVQNPVVSGSSAGAAYYHQFAGYITSLTLNQATTEFINFSGTIASTGAIDVTA
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