| Basic Information | |
|---|---|
| Taxon OID | 3300021962 Open in IMG/M |
| Scaffold ID | Ga0222713_10002133 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 21326 |
| Total Scaffold Genes | 30 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (63.33%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.06 | Long. (o) | -121.8 | Alt. (m) | Depth (m) | 12 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000635 | Metagenome / Metatranscriptome | 970 | Y |
| F002149 | Metagenome / Metatranscriptome | 589 | Y |
| F003112 | Metagenome / Metatranscriptome | 506 | N |
| F003304 | Metagenome | 494 | N |
| F007467 | Metagenome / Metatranscriptome | 350 | Y |
| F010603 | Metagenome / Metatranscriptome | 301 | Y |
| F020886 | Metagenome / Metatranscriptome | 221 | N |
| F021063 | Metagenome / Metatranscriptome | 220 | N |
| F035221 | Metagenome / Metatranscriptome | 172 | N |
| F041081 | Metagenome | 160 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222713_1000213312 | F000635 | N/A | MTLTEIAQYAGEKIGKTDADTLTFLQKSASLNYRRVWNFAPWRETVTTSTYDVTAGSRTVTLGSNVENPLSVAYNNSELQAMDLATIVSQNSSLFDDASTGTPVFFYFKGRNTSGTAQLDLYPILETTSTNTLLVVEKLQCLTRTNYVVDFPPSASAINDELRLPHVSHVVLALTHADALERERQYGKSQIVTQAANADLAAMANYELSQVGGMKQITPISLGELSIEQMFSA |
| Ga0222713_1000213314 | F002149 | AGAAGG | MTAVEYIEESGVPEAMWPNLAEWFGWFEKQGMVGIVRDEEGIAGVALARCIKDGQKPDHYVHSEDGENVFVDLTISSKGAKSLKCLLLLLAERFGPRKRITFNRSGKPRSYDYMTFMRKALL |
| Ga0222713_1000213320 | F035221 | N/A | MKAITTITLMAMLVASGLADDFAGGVYDSGCAVFSGGKGLAITSNGLIVDNGILKQTPNGCYSSCGDVYYGNGEIVTKTGYLYYGSNGTKVQVGDYYSGTAGSTYVFENDSE |
| Ga0222713_1000213322 | F007467 | N/A | MTEKEAWVKFEDGLKDAQSFDEAVAWVKKNKKIVEKLTMMAMIRRFNNDISRANKTWRN |
| Ga0222713_1000213328 | F041081 | GAGG | MIMEDVSVDFEFNGEKYTAYGNAEVDTITEDIGPVGYREHYFAEVVNNVTMSKIEISTATEDIKNPSKELLEKADDLLSIQATEDFDAGK |
| Ga0222713_1000213329 | F003304 | N/A | MKQALVTQSFGEDWQKILDLTRPRMEAYCKRHNCDFILIDKPLTHPMQYSKSAIGNIMATKGYDQVTFVDADVLITADCPKLSEDAGVFCAFDEGAYLDRKPEMVKLAGAFGGVIEPQFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWEIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKEDEAKLVGLGR |
| Ga0222713_100021333 | F010603 | AGGAG | MASEFQRSPVKAKNKAVRIDGANFANVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHT |
| Ga0222713_1000213330 | F021063 | GGTGG | VRSTHLCRGDYDDRLQQLAGEVALQAIRDLRLLRKRGMVKGMKIIKDHQGVALNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVRIDNRTLLRKLQ |
| Ga0222713_100021337 | F003112 | GAG | MTGQEYACFKEALKFAVENNNMVKETKYIGKVKHLLSVNRSIKRIVDEGRDREEVTDAVVHLAVALRYLEGKGRES |
| Ga0222713_100021338 | F020886 | GAGG | MQLSILLLHSDTWRVKVVSLDEVADLRDRVANVSERLVRMEERQMTLYSMIERSLAFHGDVANRLGALETLKTKVLAVAGVVGLACSMAWDVLKNRFNG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |