NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10304590

Scaffold Ga0222714_10304590


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10304590 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)872
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F016528Metagenome / Metatranscriptome246N
F028145Metagenome / Metatranscriptome192N
F043356Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_103045901F016528N/ANELFAKVLAENPLPYHFGDKVNTNRGIGFISGYNFKDREKVWKFTIRPFGLPNYYTDVEIVYGKVD
Ga0222714_103045903F028145N/AMKLFCIFIINLAVSLFASILLYKLFKVDVSPTIISIGLIVTYMFLPQRFHDWIAK
Ga0222714_103045904F000962GGAMNIHIPEEIKKKYPHMEFRGKQRTLNDRTVIEAYNHATEQNFFYSFEEDFFWFPSQIPDYKLPKVS
Ga0222714_103045905F043356N/AMKIDLDKVDRTQFMVHEHSLNGEIVHLIQPQHIGTKWT
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