NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10146100

Scaffold Ga0222714_10146100


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10146100 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1425
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010913Metagenome / Metatranscriptome297N
F011298Metagenome / Metatranscriptome292Y
F088881Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_101461002F088881AGGAMAVTINYNVDSIQCYTQYDQYTDVVVKVGWSCIGSGIAQVGPQSGSEVKTYYPNTTPLTVNSGSWDSGSFVPFNQLTNQIVMGWVFAEIGNQKDAIDNYVTEQVQQMINPTIVNLPLPWESSGSVQP
Ga0222714_101461003F011298N/AMAHFVKLSVLDPGHDDQENQNNRKYNPQLINLDMVINVEQSKVHSLIFTKNNSTHPIRVKESLDEILALSRGCNKVLNG
Ga0222714_101461004F010913GGAMGMIKQFFKAVINKFGCDECHNKELLMAVLESNKQQIERLNNIMSALTNLQDALNRLTTATDTAVTVLNTPHPTEEALQAAADLVNAQAARLEAASDNDPTTVA
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