NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10081673

Scaffold Ga0222714_10081673


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10081673 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2105
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001629Metagenome660Y
F002420Metagenome / Metatranscriptome560Y
F009328Metagenome / Metatranscriptome319Y
F041736Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100816734F001629AGGAMILDQGKLANGLVDELLALIHKYDESMYMSTVIGVLELVKQQLITESLNTEDDE
Ga0222714_100816735F002420GAGGMSFRESTIKYIKELMRAKTIHEVIAKELHEAHLRKLEAETAAEYAHAAIQYNERRIARLTARLMEHTEEGDYV
Ga0222714_100816737F009328GGAGGMIEVLKQGYHCVVCGRFLPADEHGVIVHDDIEHPQEMDFADEEKPQ
Ga0222714_100816739F041736GGAGMILKSQSMRFVMATMMDVEHEWRTSKWKDKSDMINPDVPMIIQVGDYGYEVQSCGGDGDIEGFVIQCKEEPVCKWEGMECIKL
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