NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10018495

Scaffold Ga0222714_10018495


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10018495 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5534
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000447Metagenome / Metatranscriptome1128Y
F002071Metagenome / Metatranscriptome596Y
F006744Metagenome / Metatranscriptome365Y
F038643Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1001849511F002071AGGAGMLEIGQTYTTTQSGIVGIIKAIDNHPSGVARVLLDVNGSERWTSVPAN
Ga0222714_1001849517F000311GGAGMYFELTAPNQLALQRAYWDAEVMGLDPQLIDSLTFNIGTGSIEKVSRIRDKFNLTETYTSEYEPTGYTGR
Ga0222714_100184952F000447GAGMGYIEIFRINEDGAGWVDLSEATPEEILDLEIGLFQEGAL
Ga0222714_100184953F006744AGGMNLEEFKAHVLATRQASKAEALSVLSATISNNNERKEN
Ga0222714_100184958F038643AGGMSDFTNWKSYPFTVDGVEFLSLLNPEGTMYQQVQKMPAQVFTMMNQSAIRELIGKVSLMSKPEIQAELDRVNEGYGQAYLALA
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