NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10098962

Scaffold Ga0222718_10098962


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10098962 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1723
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004343Metagenome / Metatranscriptome442Y
F008887Metagenome / Metatranscriptome326Y
F024204Metagenome207N
F038638Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0222718_100989622F038638GGGGGMSYKMSYDVAQFKYTNHMREHYGLIGEIEYPSRTRSHQEKSGDWVLVSPQGLKMAKVFKNGDIIA
Ga0222718_100989624F004343AGGAGMTQHSEMIEEARRLLNSERENIPSMSKNFGKDYWLLTYPCGKIVKTYEDKRKNDVIIQESHQ
Ga0222718_100989625F008887AGGAGMNRGCCNECGYKADYIIDNNNYADNGYEDLNQVPKDKMLCGVCYEESEE
Ga0222718_100989628F024204GGAMKNYSYLEILEDGIEVCASCGGANINANRNIDDQDNTKPQDHCFNCDYAEGINLCMPNDLYFYQEAKATLNKINRGEL
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