| Basic Information | |
|---|---|
| Taxon OID | 3300021958 Open in IMG/M |
| Scaffold ID | Ga0222718_10016002 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5332 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (95.24%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 37.6183 | Long. (o) | -122.2916 | Alt. (m) | Depth (m) | 12 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003051 | Metagenome / Metatranscriptome | 510 | Y |
| F003976 | Metagenome / Metatranscriptome | 459 | Y |
| F008887 | Metagenome / Metatranscriptome | 326 | Y |
| F010571 | Metagenome | 302 | Y |
| F021404 | Metagenome | 219 | Y |
| F028971 | Metagenome / Metatranscriptome | 190 | Y |
| F038195 | Metagenome | 166 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222718_1001600212 | F003976 | GGAGG | MSRLYNDYYFEKQDILDTLDKLEMSVRFLNVWVNEPMGLENARYVLEKNANQEFNWFSRDMVKELLEEETYG |
| Ga0222718_1001600213 | F010571 | AGGAGG | MSMNTRQAIYIETLYEGFYEKHYKELSKTSDDVEWIENEAMRLAEIDLDNFEMEG |
| Ga0222718_1001600214 | F038195 | AGGAGG | MKRHNDYYEYKTIPFTYFKKVANKNEFKKEWVSVRCQEDIMKQKPHNVEIRRLKRNV |
| Ga0222718_1001600215 | F008887 | GGAGG | MNRGCCNECGYKADYIIDNNNYVDNGYENLDQVPTDKMLCGVCYEEEVE |
| Ga0222718_100160022 | F028971 | GAGG | MIITKDTELTPMTKEEFRAWEEYVIKYNHDNSTDQIAYEVVWNKDEYKVKLLDLRVDKEGQE |
| Ga0222718_1001600220 | F021404 | AGGGGG | MTYKINDKIDYFFKGDEDNEPCNDVMIVKALKDLDNDEVFKLKPTANNNNVLVKGDYDRSTGKYWATKWHDMNNETLKDGNTLVFTGFIF |
| Ga0222718_100160025 | F003051 | GAGG | MKTKILKSKVVVDMNVSEYDTLFKYIGKLESMLNTLHETNDLWLSDVHNLSSLKWELVEMLDAEWNPDTYRYVKRGAK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |