| Basic Information | |
|---|---|
| Taxon OID | 3300021958 Open in IMG/M |
| Scaffold ID | Ga0222718_10000549 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 38388 |
| Total Scaffold Genes | 63 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 44 (69.84%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 37.6183 | Long. (o) | -122.2916 | Alt. (m) | Depth (m) | 12 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000302 | Metagenome / Metatranscriptome | 1337 | Y |
| F000379 | Metagenome / Metatranscriptome | 1211 | Y |
| F000464 | Metagenome / Metatranscriptome | 1105 | Y |
| F000681 | Metagenome / Metatranscriptome | 939 | Y |
| F000724 | Metagenome / Metatranscriptome | 919 | Y |
| F001205 | Metagenome / Metatranscriptome | 748 | Y |
| F004235 | Metagenome / Metatranscriptome | 447 | Y |
| F024645 | Metagenome / Metatranscriptome | 205 | Y |
| F097143 | Metagenome / Metatranscriptome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222718_1000054920 | F004235 | AGGAGG | MPITPNRTVNALIGEQTFIGKAITMIAVDWDVDADASREAMEAVSNTILSRATILAAGAVYDTGTKQDFLLEGDFTSTINSFTSLDGTVTGTLAQVLVEDIINLGTVDSIDFTSGTVAVTLKTTFKYA |
| Ga0222718_1000054927 | F000464 | N/A | MGRISKQKIRMYSHHDPDLDIEDDFWPILGIITTVLGLWTGLVHLIDYFTFDTIPWWAEPFTIAPVLALVVMKERYDSLNPLHWWPMFCGYRVKLPSREIITIRPLDSERILKQHGGLLNVHIEDFETLKFRRRKDAVIFNLRHG |
| Ga0222718_100005493 | F001205 | N/A | MFNNVLGDWPTHERFIMTSCDDKYFQVYFPRFYKTYAEHWQLPIHVHIIDPSDTSMQRLDKLDVTYTHCTTDPAVLKWPYSYVTYCQAQRFILLGHNLLQGQSVTVADVDSYALRKPNETQKQTLESDMAFTEYNGRLMATFCNLHHSRRTNAKEAAIEMQRLIEDTDKIGVDQLVMKQIFKQLPYNNLKHGEWIRHRDVKTHADLQEHNNCLVYHEKGTRGKEKGLKIEWTDIGL |
| Ga0222718_1000054941 | F097143 | N/A | MIIETIFGIVLSAVGGGDAKADPATMVLKGLMTGNKIIQKEKNREIDDSIHEELHLMTKDFIYKIGEK |
| Ga0222718_1000054944 | F000379 | AGGA | MDKIDYSNKHDIMVGYIDRSDNVVAVETGWVTTPKHMTQVLMGQYNSKEMAQELVDSPTLMPTFKKDDYWYVDGFGDVIESNLSWNKEEMRKNVGHLFLFMKGTWQYSDNGIDWTPAVEEFKEVA |
| Ga0222718_1000054945 | F024645 | AGGAG | MLKNKKQFYITELEMSDDGDGLEFYSDHSGPFTLSKARKIMEKMFRSRSFNNFYNLTIRGPRHTNGYGHKTEFYSEKDR |
| Ga0222718_1000054952 | F000681 | AGGAG | MYKRDEHYNSKINKGLLYKELDTYYSAETDLVSNMMSYAITEGLVETRHELAVANEELWCLNDWPEDHGFGSSDRAEYLRRIKETIAFERKFLQAEQELITINRLTECPKNDTVRKYMAMNDKLKEGMVA |
| Ga0222718_1000054956 | F000724 | AGGAGG | MPKKEKVWTMGNKGPTGPWVWHVWTKGSKKPLRMVAFDHQHITDQLEGRQMVKAVKQPEEKDEYSTMPLGPKGSTVNRPADYDAGFRILREWIDQNGGPPEEIRIKLRELYIDYDVIPKKTTRYSARKKKRY |
| Ga0222718_1000054963 | F000302 | AGGAG | MIKTMTQDTKTRIADLERQKIELENQLELLGYSGNLVRMHQIEEEIYEIQDTIRKLLP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |