NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10075977

Scaffold Ga0222717_10075977


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10075977 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2132
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053261Metagenome141N
F053304Metagenome141N
F068782Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_100759771F068782GGAGGMQYQVIPVRQELIPLMFADDVTIGKPYDVVNSKTTEGGYFIGGLITLNSGETYYIEPELHANGFVVKRVYVEDADETDPVLRTWGDYTDVSVFDRKDRPLFDWVLTWLINTTADSDT
Ga0222717_100759773F053261AGGAMPRKIVYTPELTAEILAFYAENSAKDTAAKFGKSEHAVQVLAYKNKFTKGGRPSKYSLSFKHEVCQYYEHHTGIETSEKYELNIANLYCWRKDLGYRNKHRGYNLYTEVTAPKAVRKNYRVVKAENGDLKAQMMNLQGQVEDLKEQNRAQSQRIESFVQAIGGLLQ
Ga0222717_100759775F053304AGGAGGMTKVKVFVHDVFLCTIPENKIEGMFAYLRRKGITNVTISEV
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