NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10041783

Scaffold Ga0222717_10041783


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10041783 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2996
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012833Metagenome / Metatranscriptome277Y
F033634Metagenome / Metatranscriptome177Y
F052940Metagenome142N
F054919Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_100417831F012833N/AMEAQRDHLNQKGKTMTAKATQLGRIAEIEAQIKVLTKERDELRADSVAFGYARWEYTIRQSAPSLAWWKENRPTVWQKYAKETTVKKFTIA
Ga0222717_100417833F052940AGGAMGNRATIEVKDETDSAPCYAYVHWNGSPEQVIEVVVKAAPVMRARDCQYAMARLIGTYHGEIEGGLSLGVTSHKEDWDNGHYIVDMGQGKITNGGQVVAKDLEFGQF
Ga0222717_100417834F033634GAGMCHAIETLIKWCRGRQTTVLDDILGGIALFAMLFILLLVTP
Ga0222717_100417835F054919N/AMKIKHENGSWVYDDEFKYAWKHGIDLVRAANLNRWEHPSNHSWVRMSLPWEKKEDDLILSFMNKFEGTGKRCDIIHCLAWAISRTTTSISTRLNTLKKDKCPCCGK
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