NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10040511

Scaffold Ga0222717_10040511


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10040511 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3051
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001802Metagenome / Metatranscriptome632Y
F007611Metagenome / Metatranscriptome348Y
F007827Metagenome344Y
F035755Metagenome171N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1004051112F035755N/AMNREELKRLWWSIPHNENKTPTYNIVVQMDKYPGRKGQGTVQIIADDKNGWSSSSHHCENPMEFALNKMKDKCNNRLEYSERYDYSKYKLIIK
Ga0222717_100405113F001802N/AMQKIKHLKNDYVQLGNLIYKPYKVCDLPANFGCISFNEKEGISEWFNYKGYTYLFETMAK
Ga0222717_100405114F007611N/AMKKKWITVLDYETSRVYQYRVTINKHAEEYITFKGHRLSNIEWMEHNDSRLITN
Ga0222717_100405118F007827AGGMKLTNKQKRSVKRQVQIDQGVKTPVTRVFVSKKIYTRKKKHKKNE
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