NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10033635

Scaffold Ga0222717_10033635


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10033635 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3382
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020385Metagenome / Metatranscriptome224Y
F030154Metagenome186Y
F063160Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_100336352F030154AGGAGMTYTIATRPIGSTLSFVPLSQFRLMSLSDAQIVARELRAAGHDAVAFNTVGV
Ga0222717_100336355F020385GGAGMTKLNFNEVLAQRQEYLDALKSRGDMYALGFLESSFLYHMGDSGLEPLNPSQLETLAKWKEESAQ
Ga0222717_100336356F063160AGGAGMIDYEVMLEDALGNVEEFTISVPDLVENVTEWVREEFPESSIVYIIPKGF

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