NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213921_1010867

Scaffold Ga0213921_1010867


Overview

Basic Information
Taxon OID3300021952 Open in IMG/M
Scaffold IDGa0213921_1010867 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1682
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006138Metagenome / Metatranscriptome380Y
F012433Metagenome / Metatranscriptome280N
F026543Metagenome197N

Sequences

Protein IDFamilyRBSSequence
Ga0213921_10108671F026543N/AMNEAYWGTTNIKVASAVASFGAKPRQLDPVTRTIKEDGSTQATFWFEAGAGAEAKAEMERTWAEMKSDPESPIRYVRAALENRETFLGLLKRAVPVRVIQRGGQTLLISENATSEQRRAILKHL
Ga0213921_10108672F006138GAGGMAAVTIGANAAGLVFGLTAEAGIGLIQSFSEARNIEKNEVRNNAGDIVAVGYYNATTSYSLSVAITGAYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVT
Ga0213921_10108673F012433AGAAGGMSSDQIGELRERLARIEERQTNIIAILERHTSELAQWSSKINTKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELVKVRMLPR
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