| Basic Information | |
|---|---|
| Taxon OID | 3300021952 Open in IMG/M |
| Scaffold ID | Ga0213921_1000106 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 33503 |
| Total Scaffold Genes | 61 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (78.69%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 33.9266 | Long. (o) | -83.4611 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002539 | Metagenome | 550 | Y |
| F012318 | Metagenome / Metatranscriptome | 281 | Y |
| F017967 | Metagenome | 237 | Y |
| F020298 | Metagenome / Metatranscriptome | 224 | Y |
| F028086 | Metagenome | 192 | Y |
| F060589 | Metagenome | 132 | Y |
| F079582 | Metagenome | 115 | N |
| F086581 | Metagenome | 110 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213921_100010622 | F060589 | AGG | MIQVQLLKHRGFYLDEEKYRHQCAVRQLIMWRKQWGLAQFREYLNKNKEKLPWQLIRDFEEQWLKGNRADEYGEWK |
| Ga0213921_100010629 | F079582 | GGAGG | MSRHDAYYEPEDDYMDSDELQSEVADMMKDDDYNPCKWGNFNEAFAATQNKDDIAALEEMLEKRDFEALGRKLWNMSYEYWEDFATGKVTGQY |
| Ga0213921_100010633 | F017967 | GGA | MGIKYYLKTPVSEYTDKDGQQKKRYQTIGIVTETKKGDLMFKLEMLPLLGMKEGAIWGYLNEPEEKGQEGQKSASSPDLATLEDDPPF |
| Ga0213921_100010635 | F002539 | AGGAG | MNDHIWTASGTDITIRWRLNGWIPPSEQQEYRDKWKYYQNLPLRNLDDKAKEQYEQVMRKAKVLRIK |
| Ga0213921_100010638 | F028086 | GGA | MTNEPIPFAGNLKTPSDDCEEAFFALYPDFFYEGSTALTLWTQGWQAALDNAENKKPLIQLI |
| Ga0213921_100010645 | F086581 | AGG | MSFDFDPVKYGVLWQKVEGYEAKFIEISKKQDKMEEQLEELIALANKSRGGFWMGMAIVSGISGLVSFFAGLWHGK |
| Ga0213921_100010659 | F012318 | AGGA | MYNSPFTPFGPTYLVGVSAVQVKTSNNGYPTSYRIVNLTSSLVRVAYQPQEPNDATVTPVVTAPSAGAPSANTFAIPANGVAVIGGIPPNAWFIASAASVEITPGEGIS |
| Ga0213921_10001068 | F020298 | AGAAG | MTAPNVYIPYPYPQSIEELEADMNAIIYQPEVPQELQDQYTNLKNSPTVQADLNQAEANSDSMANE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |