Basic Information | |
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Taxon OID | 3300021603 Open in IMG/M |
Scaffold ID | Ga0226659_10034217 Open in IMG/M |
Source Dataset Name | Granular sludge microbial community from anaerobic digester, University of Toronto, Ontario, Canada - UASBVu03_granules spades |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Toronto |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3300 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Granular Sludge → Metagenomes From Anaerobic Digester Of Solid Waste |
Source Dataset Sampling Location | ||||||||
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Location Name | University of Toronto, Toronto, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 43.6629 | Long. (o) | -79.3957 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F015605 | Metagenome / Metatranscriptome | 253 | N |
F036594 | Metagenome / Metatranscriptome | 169 | N |
Protein ID | Family | RBS | Sequence |
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Ga0226659_100342171 | F036594 | N/A | QLSVPKNFYGSNFYSVGEQGTQAVLNKVEGELKEKGVHTSLIEAEMSRVDTFKNIEPEEPFSSYYSLFSLLKARKAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERNIETRGLPPTMRFEHRLLNKQKIQNVYGFGRVGELFKGGYEVVKEKQVESWKASLFNFTTEEFVLLGSKQLEQEMRRFKEKSPSGWFSKFLKAYGAYYLASHAGKEVIIEALQNSEAERTMIWRAVQIFEEAERELLVLKQEEGSKKTLGALYEELRRKVCLN |
Ga0226659_100342178 | F015605 | AGGAG | MIDTLKLMLNEYEITDDSEIRVQPASYELGTGSKVEYPLFQTPSHGSHYGSKAYLNAENWNLTLKPLPGGRATGAFLQLSVPKNYYGSNFYSVGEQGTQAVLSKVEGELKEKGVHTPLIEADMSRVDTFKNIEPEEPFSSYYTLFSLLKARRAIQRGYGTTFLLSNSQ |
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