NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194060_10038034

Scaffold Ga0194060_10038034


Overview

Basic Information
Taxon OID3300021602 Open in IMG/M
Scaffold IDGa0194060_10038034 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2880
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001464Metagenome / Metatranscriptome689Y
F002501Metagenome / Metatranscriptome553Y
F005000Metagenome / Metatranscriptome415Y

Sequences

Protein IDFamilyRBSSequence
Ga0194060_100380341F005000N/AMNHKQIKRFQVRVEFLDDAGIPRLKYQYESMLTHDMRSKGYSRVLDIDTNFSVEFNGETWLFLMTLYGVYVGKRKAWLSEGITQGKIIPRTIR
Ga0194060_100380345F001464GAGMARRKRAQVPKKFIYFFLNDKIHKVLKSSRAKDELIAWHYEDRKRVLYSYSQVNKYMQKAYTMVEVAKILGKHKITIMDYIGEGKIKPPQKVYPIGNPDSEWSKYMFSESDILDLHQFILDAGHSSELPSRNELFAILKHNLILYTKTEEGKFVPVWKAE
Ga0194060_100380346F002501N/AMKCSKCSGTVFIDRVFSQKLHMELFCIMCGKRWMINKETSVFGKWLDEKELKYQKSSSIS
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