NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_11908984

Scaffold Ga0126371_11908984


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_11908984 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)713
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025580Metagenome201Y
F061609Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_119089842F061609GGAMKRDKRSFRVALMADRYVNPGPEGVDGVVVAAQTGWGVLQLPPDDYPVDLVKLLLFEVAEQAEEFARHGYDLVLVGHCDGLAEALARVGLALPDGTEPVSSVQLMDFLRDRPIPRAITALRQPGS
Ga0126371_119089843F025580N/AGVTITSSDPTRGGRPEWPEGTAEHVGGEGIYVEELRKAVESRGLRFPRVAGETHAIADHDETAQHASLETVLDT

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