NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10199605

Scaffold Ga0126371_10199605


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10199605 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2095
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011259Metagenome / Metatranscriptome293Y
F044745Metagenome / Metatranscriptome154Y
F061313Metagenome / Metatranscriptome132Y
F081702Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_101996052F061313AGGAGMNDPNRVLLRRGARDMTENEVQQVCGGLRTVTKCSVTPAGAIDGDTFHSECGSPDQ
Ga0126371_101996053F044745AGGAGMNDQNRVLLRRGARALNEQEVAMVAGGLRTLTACTFAAAGTADGDTFHSECGSPDQ
Ga0126371_101996057F081702GGAMKEQNRVLNRQGARELSAEEVERVSGGVVHTNVITWGPNGRDGDGLLGEA
Ga0126371_101996058F011259N/AMSRQDDNRVLVRKGARELTIDEVEQVSAAMQAHTNVCTAAMPFATVTGSGDGDGCSDSDKDSNFI
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