NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210409_10022693

Scaffold Ga0210409_10022693


Overview

Basic Information
Taxon OID3300021559 Open in IMG/M
Scaffold IDGa0210409_10022693 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6082
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011251Metagenome / Metatranscriptome293Y
F017017Metagenome / Metatranscriptome243Y
F019520Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0210409_100226933F017017N/AMLKIGQLAQIKGESPYVYEALTQIVNAVNSVGRATGVDPSGTIDPPAPIGSLSVTAADGIFDLAITDNSSVHRGIFYFAESDTTPAFSRPRVHFLGSSRNLRVALGNQTLYWRSYSQYLGSDPSRPVTFGTPPTAVTGGGTATGPQLQPSMGSGTAPGTAGGSGFGRVAESISGPVILR
Ga0210409_100226934F019520N/AVRIREYRPSDLDALRRMHAAQGFGYPFPDLESPLFLSKLVLEDDDSGREEADPNSPPSGSARVTMAILQRLTAETYLLHDPSAGTPRRRWQSFLALHDAARTAAAAHGLDDVQAFLPPRIARAFGRRLAQLGWTRDPWPCFSRQIL
Ga0210409_100226936F011251N/AMNPYWIVVGLSSLIQFFIFLRWLHRRERDDEIRTAFVRDMAINHLPHLYHALHQIAGHLGIELKDPPPVHFMELNGHDRKR
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