NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194048_10107950

Scaffold Ga0194048_10107950


Overview

Basic Information
Taxon OID3300021519 Open in IMG/M
Scaffold IDGa0194048_10107950 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1068
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015202Metagenome / Metatranscriptome256Y
F081036Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0194048_101079501F015202N/AVAMNRIQQDTMAMVGMTTPQDVFNPEVMAPGNSGIKLQMALTPNQIIQDNTVRNAADGLKEALWLVWRTLIQYGDDYGVKKLAAKFHPDSKPVFIDYQAWDDMNFCDRKHIQIELALGMMSQENALGRLQIIQKCQTDLYQMTQGMAQSGTLTPEIYAKVKKPFADTLYVLGVKEADSYLPSDDEVKQMITQGEAAAKSKEPSAEDKKRLADANLSDVRAKQIEMEVAGTDAESQLDFMAMAAGNPKVYSXFFR
Ga0194048_101079502F081036AGGAMIEAETVESFNTRLTVDTTDIKRLTPGQRDTIKHYGSQAEALLKNRDLAMFVHHYKFELADGLTMITGHTDVDNTTRIAQANYLSGMDGFVTSLKRAV
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