NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194048_10096843

Scaffold Ga0194048_10096843


Overview

Basic Information
Taxon OID3300021519 Open in IMG/M
Scaffold IDGa0194048_10096843 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1139
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029327Metagenome188Y
F050111Metagenome145Y
F074332Metagenome / Metatranscriptome119Y
F078214Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0194048_100968432F074332AGGAGMTQNHLAQYNVEELQGYFSDFHKDFYGFRPRTLGSSEDWNNREWLEAQINRIHDTMDAMKETFVGREELRRQGWIIDEAEFDDVVDPKEYARWSADADAQAYGEAQ
Ga0194048_100968433F029327GGAGGMGSFKHIETEIMHWQACGHTVEETYIYWKDYVTHEDVIRIFARECDEETA
Ga0194048_100968434F050111AGGAGMDFSYNPNNSKPLYSIRYTMKPEDIMTFVSGLHEVQADMIECAVIKKEQEGFPDASAVIKHIMEKK
Ga0194048_100968435F078214GGAGMKSSAFRLWLMRIYMEHKDEAQSYGLPTCDADTYFRMYKFWLKREFKHQQAESK
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Institute for Fundamental Biomedical Research
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