| Basic Information | |
|---|---|
| Taxon OID | 3300021519 Open in IMG/M |
| Scaffold ID | Ga0194048_10000104 Open in IMG/M |
| Source Dataset Name | Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 35430 |
| Total Scaffold Genes | 61 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 45 (73.77%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 10 (90.91%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Ontario | |||||||
| Coordinates | Lat. (o) | 49.697 | Long. (o) | -93.722 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001774 | Metagenome / Metatranscriptome | 636 | Y |
| F004517 | Metagenome / Metatranscriptome | 434 | Y |
| F007848 | Metagenome | 343 | Y |
| F011648 | Metagenome / Metatranscriptome | 288 | Y |
| F017467 | Metagenome | 240 | Y |
| F022156 | Metagenome / Metatranscriptome | 215 | Y |
| F027399 | Metagenome | 194 | Y |
| F036031 | Metagenome | 171 | Y |
| F040482 | Metagenome / Metatranscriptome | 161 | N |
| F042791 | Metagenome | 157 | Y |
| F065407 | Metagenome | 127 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0194048_1000010410 | F027399 | AGG | MNFTFTWILDKFGFQPKVETFDFPFTPTPKKVAKKTVKKATTRKPKAK |
| Ga0194048_1000010411 | F036031 | GAG | MNRIEINAITGENQVIELTAEEVTQAQFQYSEWLANQPTKEEQIAKLQAQIDELKG |
| Ga0194048_1000010427 | F042791 | AGG | MFQTAFQSNAFQVNAFQIYIPPTPTGQTGGDGFTREEWLRAQRLTKKIEARQRLLEKAIKDDNFARKQGIRDLVSPVAKVKQTKVQSKQEVKADIPLAATEDLQRSISYLERQKDNILAAVAYRKQQTLIQEQLIYMEAKRLEELDDEESVLILLH |
| Ga0194048_100001043 | F007848 | AGGAG | MKDFIGSCLLGALLGCMFAYGVPAKAQSYTMTNPQGYNMGTVQIQGNTAQFVNPMGYTTQTATIYPNQIVITSPSGYTQSVVGNAGYTVPMSPPSPPSPRVLQ |
| Ga0194048_1000010430 | F001774 | AGGAG | MALKLSVETQFGAPAPDAYARITNFFGTKDQIQVQVAIYYNEEARHSNMATVREDAHYIAIEDLKGDLIPAIYEVLKTFTQYEGAEDC |
| Ga0194048_1000010437 | F004517 | GGA | MKHMDRKYPKENALLREHKESTYEKNLVDRIARRKMIANKLKDLDKEVK |
| Ga0194048_1000010444 | F065407 | AGGAG | MFTFDEQYKQLEEVTERTKQMYEFWYNAVVSTLKDFYKTGK |
| Ga0194048_1000010450 | F017467 | N/A | LNPDNYLVSWYIAVAKKRGWPEVVRLLAQYPEKEERMKMLIKKRLGK |
| Ga0194048_1000010454 | F040482 | GGAG | MTWNLRLVNMCNPYEDYFEIREVYYDNMGKPVAHSRASIGGEDRLEVDRYIELAKLALDKPIIKFANNENTNKDN |
| Ga0194048_1000010457 | F011648 | AGGAG | MSEQEQDFNSFQEHLERIFKDLEDGVFITADEIGDLRYACGLPSPVRKNPVLKAVFDDFSTIFRSKQ |
| Ga0194048_100001049 | F022156 | GAG | MGDLDKEVVKEAIKEWLNEKVAEFGWFSLKTIGYALVALIGYLWLSTHGFQVPK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |