| Basic Information | |
|---|---|
| Taxon OID | 3300021519 Open in IMG/M |
| Scaffold ID | Ga0194048_10000085 Open in IMG/M |
| Source Dataset Name | Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 37816 |
| Total Scaffold Genes | 58 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (68.97%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Ontario | |||||||
| Coordinates | Lat. (o) | 49.697 | Long. (o) | -93.722 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000934 | Metagenome / Metatranscriptome | 828 | Y |
| F001774 | Metagenome / Metatranscriptome | 636 | Y |
| F002085 | Metagenome / Metatranscriptome | 595 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0194048_1000008519 | F000934 | AGTAG | MALTDILSISESVGINDQRFVGQVVSRNQRISTSEIITVVPFAFEMKPMNYLLYSKNRSLLNSLRIPDKSLAQYLNFGSTGWVNYIAYQGDMTSGQIATCQWQIASANKTLVLGSLPSISSSLYIVKAGDFCQVGLYAYIATADVLRGSGTTVNIPVHRNLITTLSTPVNAVIGQYGTTVSMGGNTYTGTTFQVILRDYPTYTLIPMTNDSFIQWSGSFKAFESVL |
| Ga0194048_1000008520 | F002085 | N/A | MNVITPVVDTNNIRYADFVRVTTPDATYRFATTASALTISAVDSQPFSALGILMKVGDTQRDIKSTANETVFTMVGIDTAMLGWVLGNQIKGSQIEAWKGFFNTNGELITTGGTGGLYQFFNGYVNSFSIQETWMEEVRQFVGTISVAASSIQIILKNRTAGRFTNNNNWQYFNPTDSSMDRVAFITNINYNFGKDAPANS |
| Ga0194048_1000008528 | F001774 | AGGAG | MALKLNLEQTQFGVPAPEAYARITNFFGTKDQIQVQVAIHFNEDARHGNMATVKENAHYIAIEDLKGDIIPAIYEVLKTFSDYAGSEDA |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |