NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222621_1000185

Scaffold Ga0222621_1000185


Overview

Basic Information
Taxon OID3300021510 Open in IMG/M
Scaffold IDGa0222621_1000185 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6292
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9201Long. (o)-106.9487Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065184Metagenome / Metatranscriptome128N
F074104Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0222621_10001852F074104AGAAGMTSNSENTALTYREPESRVGRRCASTLLAHGSAQIGAGAARSLPKSDSLRGPRFPGSGGLARETYFEVREQLVHRGTFLATPTPGAYTADGLACVRAARVGALGPAATQRGPQRGKAPYEKAVNEAA
Ga0222621_10001853F065184N/AMRLAAQRIPLLAAAVALALLPTACGGSGKASAPVGPPPGAGKQLSNADWPQVVDNPDAYRGATVDLVGRVSTVQKSRDGQFRGIHVYADATNSQLETTIITRASLPLLPDDYVRARGILEGTLQSGSTAGIDLRGPVVIASTLRPATFVDAASPARQRLRAKPYTVYNVTLTPYRIDFAADETRVFLRIKNATDYTIHYNATQSYLLNDGIRIRPHPHRSYPQMPADLFPGSMATGVTTFRATTPGMVFKFVTRFSSDDIKVGNVGVTTPIIWTWTF
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