| Basic Information | |
|---|---|
| Taxon OID | 3300021479 Open in IMG/M |
| Scaffold ID | Ga0210410_10000010 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 420141 |
| Total Scaffold Genes | 375 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 285 (76.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000138 | Metagenome / Metatranscriptome | 1954 | Y |
| F000231 | Metagenome / Metatranscriptome | 1516 | Y |
| F000269 | Metagenome / Metatranscriptome | 1410 | Y |
| F002014 | Metagenome / Metatranscriptome | 604 | Y |
| F015127 | Metagenome / Metatranscriptome | 257 | Y |
| F062927 | Metagenome | 130 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210410_10000010120 | F015127 | AGGAGG | VITRKLTMSTLPMFAIAFACLASTVVAQQRPAAPPINLVAGVGGPVSSSNQWSDYSALNLIAGAFIFPAVAQIKTTVLYIGFTAGTEADIGHMVLYTTKRGNYKITAVTPVKLKGVSNPIISLTNKKVCPTQPVSVTNPCVIRLDPLTLNLSTLSDYYFVMHLSTSTNNQTVGAANAQYPITSLTGWYLSGDQTQLTVGQSIPSGYNGTHPYFLLYVMSN |
| Ga0210410_10000010131 | F002014 | AGG | MRKLRIALALGFLLFAAACSPRDFLTRRLASDLIASSDTFKSTQLFWLRTGVISNKDYVSPEYLVLQRRGWITGTTDRCPPDIAPPPCWQVTLTPIGVETFHDLIPNGANSQYFSVPVARRQLTRITGISKSGAAAEVEFLWKWISLNEVGGALYDGGVQYRSTVAFRRYDDGWRVVEGSAAKSTQGLEDALKSSEPAP |
| Ga0210410_10000010252 | F000138 | AGGAG | MHTQWMSSYSIPLFSLVNYIPLGATVVTCFLSVILARATLRYAEATDKSLALAREEFEREWSPELHIKLERLSASETRIVVTNLAKISVLLQLMQLRKISQAVPFERCFLNDPLVGGMTWTQEIGKRLVVCTGPEFEGLIAASVTFYSSGRMFRTDWFRFYVEVSDGRIIRLNPTNVPARRVRVLENRKGPERRREMAQDVAAGAAVSKHSAGS |
| Ga0210410_10000010253 | F062927 | N/A | VNTTLAMHSVSPSDGPAAVVMGVGFFAFGLTMILRPASVRANFDRFADYWKQGSWHPYKMPPWGLRLAGVAMMGVAALFFYIAAVAFGR |
| Ga0210410_10000010257 | F000231 | AGG | MEAASPNIPNPFYRCAGPNCGLLKRSTDRWWLMWTSFGDYNRPVLYLCPWDEKIATQEGTLHVCGELCAQKLQSQYMGNVNESELKRRAR |
| Ga0210410_1000001040 | F000269 | AGAAG | MNRRIVSAGIVVLAFFAFFVTLSSAKDEPPKKPTDVPATVIAHLPLPQATGNQMLLQKEEGKQYLYVQQASKQGFMVVDVSKPEKPNLLKRTVQPNQATAGNLEMVTPQVAISEAPDKKPTTLTSSAHPTETVRVLDLSDPRNPKTLQEFSGVTSLLPDGGHGLIYLTNNEGLWILRYSRAALLEPSKKKLPCDSGSEISAMPPDCD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |