| Basic Information | |
|---|---|
| Taxon OID | 3300021479 Open in IMG/M |
| Scaffold ID | Ga0210410_10000001 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 721673 |
| Total Scaffold Genes | 692 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 504 (72.83%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000092 | Metagenome / Metatranscriptome | 2385 | Y |
| F000138 | Metagenome / Metatranscriptome | 1954 | Y |
| F000954 | Metagenome / Metatranscriptome | 822 | Y |
| F003137 | Metagenome / Metatranscriptome | 505 | Y |
| F003215 | Metagenome / Metatranscriptome | 500 | Y |
| F011313 | Metagenome / Metatranscriptome | 292 | Y |
| F017861 | Metagenome / Metatranscriptome | 238 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210410_10000001119 | F000954 | AGAAGG | MVAVVLAPVLLVGLALLAAGDWRTVGPTAGGDQVLVSSVTSQKHGLKTAWVRVEYKEPIRLPQGGPFVELRARVRFNCTSGSSVPIVANSEWFYSRDHSGKLVVSKKTRHDDQFGQVAEGDFGEMTREFVCKQK |
| Ga0210410_10000001219 | F017861 | AGGAG | MLNRGKVTLVESAVVLALMGILAGAIGGLAIGMVTSPKSAATSGTH |
| Ga0210410_10000001340 | F011313 | GGAGG | VSKTAAVVLAFLSLTLFPTRSKAQLIPSGNLYAGAAYASSEDVVNRLAFRGWDGSVEVFPFHRLSYIGIVLDGSGIYTRGAANSGTIQQYNLVLGPRVSMNYGKWRPFAHVMGGIQQTRSGGNLYHPVAFDIGGGVDRKLPFRNFSWRLQFDYVHTHLLSENQNEYRVSTGVVWRF |
| Ga0210410_10000001481 | F003137 | AGG | MARKKRVKRFAAVQAVKELARERMGTPPAGKVVPHKNKKPDKHKPTLDKLLEE |
| Ga0210410_10000001528 | F003215 | GGAG | MKGTLRMLRIVQWTMLGSILLYVVIGEVIRTGGRAVDPSVSYFFSTASVAIVGIIFVVRRTLVLRSAESLAAHPDDAASLSHWKNGYLATYVLCEALALFGLIQRFMGFNLQQSLPYYLGGFVLLFFFGPREPVSS |
| Ga0210410_10000001595 | F000138 | N/A | MHWINSFRVLFITLVSYIPLIATVVTCFFSLILARATLRYVEATDKGLNLAREEFEREWTPDLHIKLERVSSTEARVVVTNLARSSVLLQLLQLRKISHAVPFERCRLNDPLVGGMTWTEEMGKRILACTGKEFEGPIAASMTFYAAGRMFRTDWFRSHIQVRDGRILALEPSTMPARRVRVIERKGPERRREFVQDVAADAAPNKPDQKPDDQFFVTGA |
| Ga0210410_10000001688 | F000092 | GAG | VKQHLGRQSGVQTVEVSLLDGKVDVTPKADGQIDPAQLLKATYDSGVTAAEMDMTARGKIVKDSSGSLALQVEPNRSFAFTPNELSKGLESLTGTQTMVTVRGQLYKKPAGKKKADLSTRLTLLILEVEKKE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |