NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210402_10001120

Scaffold Ga0210402_10001120


Overview

Basic Information
Taxon OID3300021478 Open in IMG/M
Scaffold IDGa0210402_10001120 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28185
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (80.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000624Metagenome / Metatranscriptome977Y
F000696Metagenome / Metatranscriptome931Y
F000703Metagenome / Metatranscriptome928Y
F000739Metagenome / Metatranscriptome913Y
F000781Metagenome / Metatranscriptome895Y
F006229Metagenome / Metatranscriptome378Y

Sequences

Protein IDFamilyRBSSequence
Ga0210402_1000112010F006229AGGMATATETSTASLVNISMEKWPPRHRTYFGSLQISSPESGETFAVTPIRGCNGVIDLGDKRIMEIRITAREVAEDIAREINGDSGEGSFHGVFVAAGEMPTEGELADARRRLEEFHRRLVAAADLEWERTHNPMFITDLERRAARQLRLEKPWLYDSKPLAECPVCAEKIKHGVAVCRSCGAILDREKAAQYGLVAPEKTRRDASASQDRAGKQSNEAGK
Ga0210402_1000112014F000696GAGGMPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDAVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVPAVAQTDTSLQVSITDATAPPNQLPTDLLVPIKIWERPNGSTDDFLEMVDLTQHGGLPSRVQDVTLSVWEWRADGIYFVGATQDTQIRLRYAKAYPDFTDATSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSARSGYTPF
Ga0210402_1000112015F000739AGTAGMNRFELWLKGVVAAAISGAAGGVLTGFAAVGIDPQHFNLQTGMGATLRIAAAAALINSVIGVAAYLQKSPLPAD
Ga0210402_100011205F000624GGAMPIHWSTILAALVPVGVQFVLFLRWLHRRMRNDEIVRAFVRDIATNHLPHIYSALHAIARQQGIDPQEPPLVRFVEFQGHRRHD
Ga0210402_100011207F000703N/AMQIREYRESDLATLRAIHAAQAFEYPLPDLSNPLFVTKLILSKGDEENESHHNEPPPERIIGAALLRLTAEAYLLLDPNPGTPRQRWEWLLQLHAATERDAWQRGLEDVHAWLPPPVARAFGKRIAQLGWKRDDTWTPYCKRLHP
Ga0210402_100011208F000781N/AMLTVAQLAPIKDRDPYLYETLTKIVASVNATSQRAGVDPSTPAPAPTAVASINVQASNGWFDISVTDPSDARPGLFYFAESDTTPAFSSPRVYFMGASRNLYLQLGNQTLYWRAYSQYVGSLPSAPITFGSPPTAVTGGGSAGPAPLPSSGSGVLPNGQVRGGNGFGTNPGSRVTRQTIL
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