NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210402_10000033

Scaffold Ga0210402_10000033


Overview

Basic Information
Taxon OID3300021478 Open in IMG/M
Scaffold IDGa0210402_10000033 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)127285
Total Scaffold Genes125 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)80 (64.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000359Metagenome / Metatranscriptome1236Y
F000372Metagenome / Metatranscriptome1220Y
F000985Metagenome / Metatranscriptome813Y

Sequences

Protein IDFamilyRBSSequence
Ga0210402_1000003351F000359GGAGMSGQVVLYFDDQADALRFALAAGAVMAGDGSHTTADLAQKAARVTRIRLNATNTGKVRQPNPPERVA
Ga0210402_1000003360F000985AGGMKNVYEVLRQKELELTRLEKEVEALRIAAPLLSDELKEAISDPPKPTLTAAPPQQPIRIPSPAVTAAAVNAPPRAAGWEDAAKRWP
Ga0210402_1000003370F000372GGAGLTPSGPAARRWTVIASGLLILALALVVIYTRPNAFLSPIALVVVAAIGLAALLLQVRFRQDLPQVRSPLWLNVLGLLCAVFALTADVLRMPRRTLDLVSFAAVVCFGISGSLILRALRGKRSH
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