| Basic Information | |
|---|---|
| Taxon OID | 3300021476 Open in IMG/M |
| Scaffold ID | Ga0187846_10000077 Open in IMG/M |
| Source Dataset Name | Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 57104 |
| Total Scaffold Genes | 56 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (73.21%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Microbial Communities From Various Locations To Find New Lineages Of Life (Nelli) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Brazil: State of Minas Gerais | |||||||
| Coordinates | Lat. (o) | -19.8881 | Long. (o) | -43.6761 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000989 | Metagenome / Metatranscriptome | 811 | Y |
| F013500 | Metagenome / Metatranscriptome | 270 | Y |
| F039719 | Metagenome / Metatranscriptome | 163 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187846_1000007717 | F013500 | AGGA | MAAAARWLFIILVGGLGLGCAGKAYLLDGAANYARVAYGGDMESATAVAKRHCAPFERVPRFREFQEDSAYFDCVRP |
| Ga0187846_1000007718 | F039719 | GGAG | MNANSRFRYRSLANHRRATFSAWAMSIVFAAIAIISFAVDQTVVSSLGTGSDIDQSLAEFGPVRLIQSLIDIGSQRSDHDP |
| Ga0187846_100000774 | F000989 | AGGAGG | VTTIDFRSDPVKARRHRVVSLVTYADIPDIVWADDEKGCYGVRGRDVEGKQIVVEQSGPIRIVSARR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |